List of publications

Articles in scientific journals

2026

  1. 📰 A gut microbiome-kidney-heart axis predictive of future cardiovascular diseases

    2. Kanta Chechi, Rima Chakaroun, Antonis Myridakis, Sofia K. Forslund-Startceva, Sebastien Fromentin, Trine Nielsen, Judith Aron-Wisneswky, Eugeni Belda, Edi Prifti, Pierre Bel Lassen, Gwen Falony, Sara Vieira-Silva, Julien Chilloux, Kazuhiro Sonomura, Lesley Hoyles, Laura Martinez-Gili, Francesco Pallotti, Petros Andrikopoulos, Francesc Puig-Castellví, Romina Pacheco Tapia, Inés Castro-Dionicio, Hugo Roume, Nicolas Pons, Emmanuelle Le Chatelier, Benoit Quinquis, Nathalie Galleron, Magali Berland, Michael T. Olanipekun, Manyi Jia, Angelos Manolias, Bridget Holmes, Solia Adriouch, Matthias Blüher, Luis Pedro Coelho, Kévin Da Silva, Pilar Galan, Boyang Ji, Ana Luisa Neves, Christine Rouault, Joe-Elie Salem, Valentina Tremaroli, Tue H. Hansen, Nadja B. Søndertoft, Christian Lewinter, Helle K. Pedersen, The MetaCardis Consortium, Peter D. Mark, Jens P. Goetze, Lars Køber, Henrik Vestergaard, Torben Hansen, Jean-Daniel Zucker, Taka-Aki Sato, Serge Hercberg, Fredrik Bäckhed, Ivica Letunic, Jean-Michel Oppert, Jens Nielsen, Jeroen Raes, Ioanna Tzoulaki, Abbas Dehghan, Verena Zuber, Emmanuelle Bouzigon, Mark Lathrop, Parminder Raina, Philippe Froguel, Fumihiko Matsuda, Florence Demenais, Dominique Gauguier, Michael Stumvoll, Peer Bork, Oluf Pedersen, S. Dusko Ehrlich, Karine Clément, Marc-Emmanuel Dumas. Nature Communications (2026). xx, xxx.

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2025

  1. 📰 Prominent mediatory role of gut microbiome in the effect of lifestyle on host metabolic phenotypes

    2. Solia Adriouch, Eugeni Belda, Timothy D Swartz, Sofia Forslund, Edi Prifti, Judith Aron-Wisnewsky, Rima Chakaroun, Trine Nielsen, Christine Poitou, Pierre Bel-Lassen, Christine Rouault, Tiphaine Le Roy, Petros Andrikopoulos, Kanta Chechi, Francesc Puig-Castellví, Ines Castro Dionicio, Philippe Froguel, Bridget Holmes, Rohia Alili, Fabrizio Andreelli, Hedi Soula, Joe-Elie Salem, Gwen Falony, Sara Vieira-Silva, MetaCardis Consortium, Jeroen Raes, Peer Bork, Michael Stumvoll, Oluf Pedersen, S. Dusko Ehrlich, Marc-Emmanuel Dumas, Jean-Michel Oppert, Maria Carlota Dao, Jean-Daniel Zucker, Karine Clément. Gut Microbes (2025). 17, 2599565.

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  1. 📰 Intrahepatic levels of microbiome-derived hippurate associates with improved metabolic dysfunction-associated steatotic liver disease

    2. Maxime Deslande, Francesc Puig-Castellví, Inés Castro-Dionicio, Romina Pacheco-Tapia, Violeta Raverdy, Robert Caiazzo, Guillaume Lassailly, Audrey Leloire, Petros Andrikopoulos, Yasmina Kahoul, Nawel Zaïbi, Bénédicte Toussaint, Frédérik Oger, Nicolas Gambardella, Philippe Lefebvre, Mehdi Derhourhi, Souhila Amanzougarene, Bart Staels, François Pattou, Philippe Froguel, Amélie Bonnefond, Marc-Emmanuel Dumas. Molecular Metabolism (2024). 92, 102090.

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2024

  1. 📰 Multivariate curve resolution-based data fusion approaches applied in 1H NMR metabolomic analysis of healthy cohorts

    2. Andrés R. Martínez Bilesio, Francesc Puig-Castellví, Romà Tauler, Mariela Sciara, Fabián Fay, Rodolfo M. Rasia, Paula Burdisso, Alejandro G. García-Reiriz. Analytica Chimica Acta (2024). 1309, 342689.

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  1. 📰 Monitoring of cellulose-rich biowaste co-digestion with 3D fluorescence spectroscopy and mass spectrometry-based metabolomics

    2. Olivier Chapleur, Angéline Guenne, Douglas N. Rutledge, Francesc Puig-Castellví. Chemosphere (2024). 349, 140824.

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2023

  1. 📰 Advances in the integration of metabolomics and metagenomics for human gut microbiome and their clinical applications

    2. Francesc Puig-Castellví, Romina Pacheco-Tapia, Maxime Deslande, Manyi Jia, Petros Andrikopoulos, Kanta Chechi, Amélie Bonnefond, Philippe Froguel, Marc-Emmanuel Dumas. Trends in Analytical Chemistry (2023). 167, 117248.

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  1. 📰 Evidence of a causal and modifiable relationship between kidney function and circulating trimethylamine N-oxide with implications for heart and kidney disorders

    2. Petros Andrikopoulos, Judith Aron-Wisnewsky, Rima M Chakaroun, Antonis Myridakis, Sofia Kirke Forslund, Trine Nielsen, Solia Adriouch, Bridget Holmes, Julien Chilloux, Sara Vieira-Silva, Gwen Falony, Joe-Elie Salem, Fabrizio Andreelli, Eugeni Belda, Julius Kieswich, Kanta Chechi, Francesc Puig-Castellví, Mickael Chevalier, Emmanuelle Le Chatelier, Michael T Olanipekun, Lesley Hoyles, Renato Alves, Gerard Helft, Richard Isnard, Lars Køber, Luis Pedro Coelho, Christine Rouault, Dominique Gauguier, Jens Peter Gøtze, Edi Prifti, Jean-Daniel Zucker, Fredrik Bäckhed, Henrik Vestergaard, Torben Hansen, Jean-Michel Oppert, Matthias Blüher, Jens Nielsen, Jeroen Raes, Peer Bork, Muhammad M Yaqoob, Michael Stumvoll, Oluf Pedersen, S Dusko Ehrlich, Karine Clément, Marc-Emmanuel Dumas. Nature Communications (2023). 14, 5843.

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2022

  1. 📰 A longitudinal study of the effect of temperature modification in full-scale anaerobic digesters – dataset combining 16S rDNA gene sequencing, metagenomics, and metabolomics data

    2. Francesc Puig-Castellví, Cédric Midoux, Angéline Guenne, Delphine Conteau, Oscar Franchi, Chrystelle Bureau, Céline Madigou, Delphine Jouan-Rimbaud Bouveresse, Pablo Kroff, Laurent Mazéas, Douglas N Rutledge, Gilberte Gaval, Olivier Chapleur. Data in Brief (2022). 41, 107960.

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2021

  1. 📰 Metataxonomics, metagenomics, metabolomics analysis of the influence of temperature modification in full-scale anaerobic digesters

    2. Francesc Puig-Castellví, Cédric Midoux, Angéline Guenne, Delphine Conteau, Oscar Franchi, Chrystelle Bureau, Céline Madigou, Delphine Jouan-Rimbaud Bouveresse, Pablo Kroff, Laurent Mazéas, Douglas N Rutledge, Gilberte Gaval, Olivier Chapleur. Bioresource Technology (2021). 346, 126612.

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  1. 📰 Rearrangement of incomplete multi-omics datasets combined with ComDim for evaluating replicate cross-platform variability and batch influence

    2. Francesc Puig-Castellví, Delphine Jouan-Rimbaud Bouveresse, Laurent Mazéas, Olivier Chapleur, Douglas N Rutledge. Chemometrics and Intelligent Laboratory Systems (2021). 218, 104422.

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  1. 📰 Detection of chocolate powder adulteration with peanut using near-infrared hyperspectral imaging and Multivariate Curve Resolution

    2. Antoine Laborde, Francesc Puig-Castellví, Delphine Jouan-Rimbaud Bouveresse, Luc Eveleigh, Christophe Cordella, Benoît Jaillais. Food Control (2021). 119, 107454.

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2020

  1. 📰 MCR-ALS analysis of 1H NMR spectra by segments to study the zebrafish exposure to acrylamide

    2. Yolanda Pérez, Marta Casado, Demetrio Raldúa, Eva Prats, Benjamín Piña, Romà Tauler, Ignacio Alfonso, Francesc Puig-Castellví. Analytical and Bioanalytical Chemistry (5695-5706). 412, 23.

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  1. 📰 Effect of ammonia exposure and acclimation on the performance and the microbiome of anaerobic digestion

    2. Francesc Puig-Castellví, Laëtitia Cardona, Chrystelle Bureau, Delphine Jouan-Rimbaud Bouveresse, Christophe BY Cordella, Laurent Mazéas, Douglas N Rutledge, Olivier Chapleur. Bioresource Technology Reports (2020). 11, 100488.

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  1. 📰 Assessment of substrate biodegradability improvement in anaerobic co-digestion using a chemometrics-based metabolomic approach

    2. Francesc Puig-Castellví, Laëtitia Cardona, Delphine Jouan-Rimbaud Bouveresse, Christophe BY Cordella, Laurent Mazéas, Douglas N Rutledge, Olivier Chapleur. Chemosphere (2020). 254, 126812.

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  1. 📰 Integrative Analyses to Investigate the Link between Microbial Activity and Metabolite Degradation during Anaerobic Digestion

    2. Laëtitia Cardona, Kim Anh Lê Cao, Francesc Puig-Castellví, Chrystelle Bureau, Céline Madigou, Laurent Mazéas, Olivier Chapleur. Journal of Proteome Research (2020). 19 (10), 3981-3992.

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  1. 📰 Assessment of the microbial interplay during anaerobic co-digestion of wastewater sludge using common components analysis

    2. Francesc Puig-Castellví, Laëtitia Cardona, Delphine Jouan-Rimbaud Bouveresse, Christophe BY Cordella, Laurent Mazéas, Douglas N Rutledge, Olivier Chapleur. PloS one (2020). 15 (5), e0232324.

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  1. 📰 Targeting redox metabolism: the perfect storm induced by acrylamide poisoning in the brain

    2. Demetrio Raldúa, Marta Casado, Eva Prats, Melissa Faria, Francesc Puig-Castellví, Yolanda Pérez, Ignacio Alfonso, Chuan-Yu Hsu, Mark A Arick II, Natàlia Garcia-Reyero, Tamar Ziv, Shani Ben-Lulu, Arie Admon, Benjamin Piña. Scientific reports (2020). 10 (1), 1-12.

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2018

  1. 📰 Comparative analysis of 1H NMR and 1H–13C HSQC NMR metabolomics to understand the effects of medium composition in yeast growth

    2. Francesc Puig-Castellví, Yolanda Pérez, Benjamín Piña, Romà Tauler, Ignacio Alfonso. Analytical chemistry (2018). 90 (21), 12422-12430.

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  1. 📰 Deciphering the Underlying Metabolomic and Lipidomic Patterns Linked to Thermal Acclimation in Saccharomyces cerevisiae

    2. Francesc Puig-Castellví, Carmen Bedia, Ignacio Alfonso, Benjamin Piña, Romà Tauler. Journal of proteome research (2018). 17 (6), 2034-2044.

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  1. 📰 Compression of multidimensional NMR spectra allows a faster and more accurate analysis of complex samples

    2. Francesc Puig-Castellví, Yolanda Pérez, Benjamín Piña, Romà Tauler, Ignacio Alfonso. Chemical Communications (2018). 54 (25), 3090-3093.

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2017

  1. 📰🔥 Hot paper Unraveling the multistimuli responses of a complex dynamic system of pseudopeptidic macrocycles

    2. Angel M Valdivielso Francesc Puig-Castellví, Joan Atcher, Jordi Solà, Romà Tauler, Ignacio Alfonso. Chemistry–A European Journal (2017). 23, 45.

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  1. 📰 Untargeted assignment and automatic integration of 1H NMR metabolomic datasets using a multivariate curve resolution approach

    2. Francesc Puig-Castellví, Ignacio Alfonso, Romà Tauler. Analytica Chimica Acta (2017). 964, 55-66.

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2016

  1. 📰 1H NMR metabolomic study of auxotrophic starvation in yeast using Multivariate Curve Resolution-Alternating Least Squares for Pathway Analysis

    2. Francesc Puig-Castellví, Ignacio Alfonso, Benjamin Piña, Romà Tauler. Scientific reports (2016). 6 (1), 1-12.

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2015

  1. 📰 A quantitative 1H NMR approach for evaluating the metabolic response of Saccharomyces cerevisiae to mild heat stress

    2. Francesc Puig Castellví, Ignacio Alfonso, Benjamí Piña, Romà Tauler. Metabolomics (2015). 11 (6), 1612-1625.

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Book chapters

2026

  1. 📰 Data analysis in applications of chromatography coupled with mass spectrometry and ion mobility spectrometry

    2. Carlos Pérez-López, Joaquim Jaumot, Francesc Puig-Castellví. Problem-Oriented Analytical Chemistry Driven by Chemometrics (2026). , 335-357.

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2018

  1. 📰 Applications of metabolomics analysis in environmental research

    2. Carmen Bedia, Paulo Cardoso, Núria Dalmau, Elba Garreta-Lara, Cristian Gómez-Canela, Eva Gorrochategui, Meritxell Navarro-Reig, Elena Ortiz-Villanueva, Francesc Puig-Castellví, Romà Tauler. Comprehensive Analytical Chemistry (2018). 82, 533-582.

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